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spfluo-app v0.1.0 documentation
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  • Installation
  • Tutorial
    • Creating a project
    • Importing images
    • Visualise data with napari
    • Picking particles manually
    • Extracting particles
    • Importing a PSF
    • Running the ab initio reconstruction
    • Alignment
    • Gather more data with automatic picking
    • Running the refinement
    • Conducting experiments
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Tutorial¶

spfluo-app is a software aiming at bringing single particle reconstruction to fluorescence imaging.

This tutorial will guide you through the app. But first, install the app !

What’s covered here:

  • Creating a project
  • Importing images
  • Visualise data with napari
  • Picking particles manually
  • Extracting particles
  • Importing a PSF
  • Running the ab initio reconstruction
  • Alignment
  • Gather more data with automatic picking
  • Running the refinement
  • Conducting experiments
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Creating a project
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Installation
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